Holmes, R.T., and G. E. Likens. 2016. Hubbard Brook: The Story of a Forest Ecosystem. Yale University Press, New Haven. pp 1-270.
Townsend, A. K., E. G. Cooch, T. S. Sillett, N. L. Rodenhouse, R. T. Holmes, and M. S. Webster. 2016. Contrasting effects of warm springs and global climate cycles on population dynamics of a migratory songbird. Global Change Biology 22: 544-555 (doi: 10.1111/gcb.13053).
Marra, P. P., C. E. Studds, S. Wilson, T. S. Sillett, T. W. Sherry, and R. T. Holmes. 2015. Non-breeding season habitat quality mediates the strength of density-dependence for a migratory bird. 2015. Proceedings of the Royal Society London B 282, doi.org/10.1098/rspb.2015.0624.
Sherry, T.W., S. Wilson, S. Hunter, and R.T. Holmes. 2015. Impacts of nest predators and weather on reproductive success and population limitation in a long-distance migratory songbird. Journal of Avian Biology 46: 559- 569.
Lany, N.K., M. P. Ayres, E.E. Stange, T.S. Sillett, N.L. Rodenhouse, and R.T. Holmes. 2015. Breeding timed to maximize reproductive success for a migratory songbird: the importance of phenological asynchrony. Oikos, doi: 10.1111/oik.02412.
Townsend, A. K., T. S. Sillett, N. K. Lany, S. A. Kaiser, N. L. Rodenhouse, M.S. Webster, and R. T. Holmes. 2013. Warm springs, early lay dates, and double-brooding in a North American migratory songbird, the Black-throated Blue Warbler. PLoS One 8(4): e59467. doi:10.1371/
Swatantran, A., R. Dubayah, S. Goetz, M. Hofton, M. G. Betts, M. Sun, M. Simard, and R. T. Holmes. 2012. Mapping migratory bird prevalence using remote sensing data fusion. PLoS One 7(1): doi:10.1371/journal.pone.0028922
Holmes, R. T. 2011. Birds in forest ecosystems: long-term research on populations and community processes in the Hubbard Brook Experimental Forest. Forest Ecology and Management 262: 20-32
Goetz, S. J., S. Steinberg, M. Betts, R. T. Holmes, P. Doran, R. Dubayah, and M. Hofton. 2010. Lidar remote sensing variables predict breeding habitat of a Neotropical migrant bird. Ecology 91: 1569-1576
Faaborg, J., R.T. Holmes, et al. 2010. Recent advances in understanding migration systems of New World landbirds. Ecological Monographs, 80:3-48
Rodenhouse N.L., S.N. Matthews, K.P. McFarland, J.D. Lambert, L.R. Iverson, A. Prasad, T.S. Sillett, and R.T. Holmes. 2008. Potential effects of climate change on birds of the Northeast. Mitig. Adapt. Strat. Global Change 13: 517-540
Betts, M.G., N.L. Rodenhouse, T.S. Sillett, P.J. Doran, and R.T. Holmes. 2008. Dynamic occiupancy models reveal within-breeding season movement up a habitat quality gradient by a migrant songbird. Ecography 31: 592-600
Holmes, R.T. 2007. Understanding population change in migratory songbirds: long-term and experimental studies of Neotropical migrants in breeding and wintering areas. Ibis 149 (S2): 2-13
Johnson, M.D., T.W. Sherry, R.T. Holmes, and P.P. Marra. 2006. Assessing habitat quality for a migratory songbird wintering in natural and agricultural habitats. Conservation Biology 20: 1433-1444
Nagy, L.R., and R.T. Holmes. 2005. Food limits annual fecundity of a migratory songbird: an experimental study. Ecology 86: 675-681
Sillett, T.S., N.L. Rodenhouse, and R.T. Holmes. 2004. Experimentally reducing neighbor density affects reproduction and behavior of a migratory songbird. Ecology 85: 2467-2477
Rodenhouse, N.L., T.S. Sillett, P.J. Doran, and R.T. Holmes. 2003. Multiple density-dependent mechanisms regulate a migratory bird population during the breeding season. Proc. Royal Society London B 270:2105-2110
Jones, J., P. J. Doran and R.T. Holmes. 2003. Climate and food synchronize regional forest bird abundances. Ecology 84: 3024-3032
Rubenstein, D.R., C. P. Chamberlain, R.T. Holmes, et al. 2002. Linking breeding and wintering ranges of a Neotropical migrant songbird using stable isotopes. Science 295:591-593
Sillett, T.S., and R.T. Holmes. 2002. Variation in survivorship of a migratory songbird throughout its annual cycle. Journal of Animal Ecology 71:296-308
McPeek, M.A., N.L. Rodenhouse, T.W. Sherry, and R.T. Holmes. 2001. Site dependent population regulation: population-level regulation without individual-level interactions. Oikos 94:417-424
Holmes, R.T., and T.W. Sherry. 2001. Thirty-year bird population trends in an unfragmented temperate deciduous forest: importance of habitat change. Auk 118:589-610
Sillett, T.S., R.T. Holmes, and T.W. Sherry. 2000. Impacts of a global climate cycle on population dynamics of a migratory songbird. Science 288: 2040-2042